Overview
Keras is a high-level neural networks API developed with a focus on enabling fast experimentation. Being able to go from idea to result with the least possible delay is key to doing good research. Keras has the following key features:
Allows the same code to run on CPU or on GPU, seamlessly.
User-friendly API which makes it easy to quickly prototype deep learning models.
Built-in support for convolutional networks (for computer vision), recurrent networks (for sequence processing), and any combination of both.
Supports arbitrary network architectures: multi-input or multi-output models, layer sharing, model sharing, etc. This means that Keras is appropriate for building essentially any deep learning model, from a memory network to a neural Turing machine.
This website provides documentation for the R interface to Keras. See the main Keras website at https://keras.io for additional information on the project.
Installation
First, install the keras R package:
install.packages("keras3")or install the development version with:
remotes::install_github("rstudio/keras")The Keras R interface requires that a backend engine be installed. This is TensorFlow by default.
keras3::install_keras(backend = "tensorflow")This will provide you with default installation of Keras and
TensorFlow that is GPU capable, if a GPU is available. If you want a
more customized installation, e.g. see the documentation for
install_keras() and the installation
section.
MNIST Example
We can learn the basics of Keras by walking through a simple example: recognizing handwritten digits from the MNIST dataset. MNIST consists of 28 x 28 grayscale images of handwritten digits like these:
The dataset also includes labels for each image, telling us which digit it is. For example, the labels for the above images are 5, 0, 4, and 1.
Preparing the Data
The MNIST dataset is included with Keras and can be accessed using
the dataset_mnist() function. Here we load the dataset then
create variables for our test and training data:
library(keras3)
mnist <- dataset_mnist()
x_train <- mnist$train$x
y_train <- mnist$train$y
x_test <- mnist$test$x
y_test <- mnist$test$yThe x data is a 3-d array
(images, width, height) of grayscale values. To prepare the
data for training we convert the 3-d arrays into matrices by reshaping
width and height into a single dimension (28x28 images are flattened
into length 784 vectors). Then, we convert the grayscale values from
integers ranging between 0 to 255 into floating point values ranging
between 0 and 1:
# reshape
x_train <- array_reshape(x_train, c(nrow(x_train), 784))
x_test <- array_reshape(x_test, c(nrow(x_test), 784))
# rescale
x_train <- x_train / 255
x_test <- x_test / 255Note that we use the array_reshape() function rather
than the dim<-() function to reshape the array. This is
so that the data is re-interpreted using row-major semantics (as opposed
to R’s default column-major semantics), which is in turn compatible with
the way that the numerical libraries called by Keras interpret array
dimensions.
The y data is an integer vector with values ranging from
0 to 9. To prepare this data for training we one-hot encode the vectors
into binary class matrices using the Keras to_categorical()
function:
y_train <- to_categorical(y_train, 10)
y_test <- to_categorical(y_test, 10)Defining the Model
The core data structure of Keras is a model, a way to organize layers. The simplest type of model is the Sequential model, a linear stack of layers.
We begin by creating a sequential model and then adding layers using
the pipe (|>) operator:
model <- keras_model_sequential(input_shape = c(784))
model |>
layer_dense(units = 256, activation = 'relu') |>
layer_dropout(rate = 0.4) |>
layer_dense(units = 128, activation = 'relu') |>
layer_dropout(rate = 0.3) |>
layer_dense(units = 10, activation = 'softmax')The input_shape argument to the first layer specifies
the shape of the input data (a length 784 numeric vector representing a
grayscale image). The final layer outputs a length 10 numeric vector
(probabilities for each digit) using a softmax activation
function.
Use the summary() function to print the details of the
model:
summary(model)## Model: "sequential"
## ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━┓
## ┃ Layer (type) ┃ Output Shape ┃ Param # ┃
## ┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━┩
## │ dense (Dense) │ (None, 256) │ 200,960 │
## ├─────────────────────────────────┼────────────────────────┼───────────────┤
## │ dropout (Dropout) │ (None, 256) │ 0 │
## ├─────────────────────────────────┼────────────────────────┼───────────────┤
## │ dense_1 (Dense) │ (None, 128) │ 32,896 │
## ├─────────────────────────────────┼────────────────────────┼───────────────┤
## │ dropout_1 (Dropout) │ (None, 128) │ 0 │
## ├─────────────────────────────────┼────────────────────────┼───────────────┤
## │ dense_2 (Dense) │ (None, 10) │ 1,290 │
## └─────────────────────────────────┴────────────────────────┴───────────────┘
## Total params: 235,146 (918.54 KB)
## Trainable params: 235,146 (918.54 KB)
## Non-trainable params: 0 (0.00 B)
plot(model)
Next, compile the model with appropriate loss function, optimizer, and
metrics:
model |> compile(
loss = 'categorical_crossentropy',
optimizer = optimizer_rmsprop(),
metrics = c('accuracy')
)Training and Evaluation
Use the fit() function to train the model for 30 epochs
using batches of 128 images:
history <- model |> fit(
x_train, y_train,
epochs = 30, batch_size = 128,
validation_split = 0.2
)The history object returned by fit()
includes loss and accuracy metrics which we can plot:
plot(history)
Evaluate the model’s performance on the test data:
model |> evaluate(x_test, y_test)## 313/313 - 1s - 2ms/step - accuracy: 0.9816 - loss: 0.0847## $accuracy
## [1] 0.9816
##
## $loss
## [1] 0.08465149Generate predictions on new data:
probs <- model |> predict(x_test)## 313/313 - 0s - 1ms/step
max.col(probs) - 1L## [1] 7 2 1 0 4 1 4 9 5 9 0 6 9 0 1 5 9 7 3 4 9 6 6 5 4 0 7 4 0 1 3 1 3 4 7
## [36] 2 7 1 2 1 1 7 4 2 3 5 1 2 4 4 6 3 5 5 6 0 4 1 9 5 7 8 9 3 7 4 6 4 3 0
## [71] 7 0 2 9 1 7 3 2 9 7 7 6 2 7 8 4 7 3 6 1 3 6 9 3 1 4 1 7 6 9
## [ reached getOption("max.print") -- omitted 9900 entries ]Keras provides a vocabulary for building deep learning models that is simple, elegant, and intuitive. Building a question answering system, an image classification model, a neural Turing machine, or any other model is just as straightforward.
Deep Learning with R Book
If you want a more comprehensive introduction to both Keras and the concepts and practice of deep learning, we recommend the Deep Learning with R, 2nd Edition book from Manning. This book is a collaboration between François Chollet, the creator of (Python) Keras, J.J. Allaire, who wrote the original R interface to Keras, and Tomasz Kalinowski, the maintainer of the R interface to Keras.
The book presumes no significant knowledge of machine learning and deep learning, and goes all the way from basic theory to advanced practical applications, all using the R interface to Keras.
Why this name, Keras?
Keras (κέρας) means horn in Greek. It is a reference to a literary image from ancient Greek and Latin literature, first found in the Odyssey, where dream spirits (Oneiroi, singular Oneiros) are divided between those who deceive men with false visions, who arrive to Earth through a gate of ivory, and those who announce a future that will come to pass, who arrive through a gate of horn. It’s a play on the words κέρας (horn) / κραίνω (fulfill), and ἐλέφας (ivory) / ἐλεφαίρομαι (deceive).
Keras was initially developed as part of the research effort of project ONEIROS (Open-ended Neuro-Electronic Intelligent Robot Operating System).
“Oneiroi are beyond our unravelling –who can be sure what tale they tell? Not all that men look for comes to pass. Two gates there are that give passage to fleeting Oneiroi; one is made of horn, one of ivory. The Oneiroi that pass through sawn ivory are deceitful, bearing a message that will not be fulfilled; those that come out through polished horn have truth behind them, to be accomplished for men who see them.” Homer, Odyssey 19. 562 ff (Shewring translation).